AtomicSystem.view

AtomicSystem.view(trajectory=None)

Visualize the current system in VMD, with an optional trajectory.

Parameters:

trajectorystr, optional

Path to a trajectory file to overlay onto this system’s topology. All formats supported by MDAnalysis can be used. Defaults to None.

Examples

>>> system = AtomicSystem("input.data")
>>> system.view()
>>> system.view(trajectory="production.dcd")