density_map#

density_map(univ, atom_types, interface_coordinate, axis='z', eps=3.0, start=0, end=-1, bin_size=0.1)[source]#

Create a 2D density map of atoms within a specified distance of an interface.

Parameters:

univmda.Universe: The input MDAnalysis Universe to analyze.
atom_typesstr or list: Atom types to consider.
interface_coordinatefloat: Interface coordinate along the given axis.
axisstr: Axis parallel to which to calculate the density.
epsfloat: Half-thickness of the slab: atoms between interface_coordinate - eps and interface_coordinate + eps are counted.
startint: Starting trajectory frame.
endint: Ending trajectory frame.
bin_sizefloat: Size of bins for the histogram in Angstroms.

Returns: